Publications

Articles

LINK ]: Pinskiy V, Tolpygo AS, Jones J, Weber K, Franciotti N, Mitra PP (2013). A low-cost technique to cryo-protect and freeze rodent brains, precisely aligned to stereotaxic coordinates for whole-brain cryosectioning. Journal Neuroscience Methods 218(2), 206-213.

LINK ]: Menashe I, Grange P, Larsen EC, Banerjee-Basu S,  Mitra PP (2013). Co-expression Profiling of Autism Genes in the Mouse Brain. PLOS Computational Biology9(7), e1003128.

[ PDF ]: Grange P, Hawrylycz M, Mitra PP (2012). Computational Neuroanatomy and Co-expression of Genes in the Adult Mouse Brain, Analysis Tools for the Allen Brain Atlas. Quantitative Biology 0002 (2012).

[ PDF ]: Grange P, Mitra PP (2012). Computational Neuroanatomy and Gene Expression: Optimal Sets of Marker Genes for Brain Regions. IEEE, 46th annual Conference on Information Sciences and Systems, Princeton 2012.

[ PDF ] : Bohland JW, Bokil H, Pathak SD, Lee CK, Ng L, Lau C, Kuan C, Hawrylycz M, Mitra PP (2010). Clustering of Spatial Gene Expression Patterns in the Mouse Brain, and Comparison with Classical Neuroanatomy. Methods 50 (2010) 105–112.

[ PDF LINK]: Bohland JW, Wu C, Barbas H, Bokil H, Cline HT, Freed PJ, Greenspan RJ, Haber SN, Hawrylycz M, Herrera DG, Hilgetag CC, Huang ZJ, Jones A, Jones EG, Karten HJ, Kleinfeld D, Kotter R, Lester HA, Lin JM, Mikula S, Panksepp J, Safdieh J, Saper CB, Schiff ND, Stillman BW, Svoboda K, Swanson LW, Toga AW, Watson JD, Mitra PP (2009). A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale. PLoS Computational Biology. 5(3): e1000334.

[ PDF | LINK ] : Bohland JW, Bokil H, Allen CB, Mitra PP. The brain atlas concordance problem: quantitative comparison of anatomical parcellations. PLoS One. 2009 Sep 29;4(9):

[ PDF ] : Ng L, Bernard A, Lau C, Overly CC, Dong HW, Kuan C, Pathak S, Sunkin SM, Dang C, Bohland JW, Bokil H, Mitra PP, Puelles L, Hohmann J, Anderson DJ, Lein ES, Jones AR & Hawrylycz M (2009). An Anatomic Atlas of the Adult Mouse Brain. Nature Neuroscience 12(3), 356-362.

LINK ] : Lin JM, Bohland JW, Andrews P, Burns GA, Allen CB, Mitra PP (2008). An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006. PLoS One, 3(4): e2052.

Conference Posters

2012

PDF ] : Grange P, Bohland JW, Hawrylycz M, Mitra PP. A software suite for multivariate analysis of brain-wide gene-expression maps, 2012 Meeting of the Society for Neuroscience, New Orleans, LA.

PDF ] : Pinskiy V, Tolpygo AS, Franciotti N, Weber K, Mitra PP. Whole Skull and Spinal Cord Cryosectioning of Adult Mouse, 2012 Meeting of the Society for Neuroscience, New Orleans, LA.

Previous years

PDF ] : Grange P, Okaty BW, Nelson SB, Hawrylycz M, Mitra PP, Distribution of cell types in the mouse brain from the Allen Atlas of the adult mouse brain, Society for Neuroscience Meeting 2011, Washington, DC.

PDF ] : Mukhopadhyay S, Grange P, Sengupta A, Mitra PP, Inferences about brain evolution from brain-wide gene-expression maps, Society for Neuroscience Meeting 2011, Washington, DC.

PDF ] : Pinskiy V, Krishnan K, Mukhopadhyay S, Collins Z, Tolpygo AS, Huang JZ, Mitra PP, High-Throughput Whole Brain Neuroanatomical mapping of GABAergic cell types in C57BL/6 mice, Society for Neuroscience Meeting 2011, Washington, DC.

PDF ] : Pinskiy V, Jones J, Wang H, Cox H, Mitra PP. Tape-transfer assisted cryosectioning for the Mouse Brain Architecture Project. 2010 Meeting of the Society for Neuroscience, San Diego, CA.

PDF ] : Grange P, Pologruto T, Pinskiy V, Wang H, Khabbaz A, Spring S, Yu L, Germann J, Henkelman M, Mitra PP. Computer-guided stereotactic injections for the Mouse Brain Architecture Project. 2010 Meeting of the Society for Neuroscience, San Diego, CA.

PDF ] : Grange P and Mitra PP.  Marker genes and the anatomy of the mouse brain. 2010 Meeting of the Society for Neuroscience, San Diego, CA.

PDF ] : Bohland JW, Bokil, H Pathak S, Lin JM, Lee CK, Ng L, Osorio-Duque F, Lau C, Herrera D, Hawrylycz M, Mitra PP. Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy, 2008 Meeting of the Society for Neuroscience, Washington, D.C.

PDF ] : Bokil H, Bohland JW, Pathak S, Lin JM, Lee CK, Ng L, Osorio-Duque F, Lau C, Herrera D, Hawrylycz M, Mitra PP. Spatial correlation and localization patterns of gene expression in the mouse brain. 2008 Meeting of the Society for Neuroscience, Washington, D.C.

[ PDF ] : Lin JM, Bohland JW, Andrews PA, Iossifov I, Yankama B, Kulkarni J, Wu C, Berwick RC, Di Sciullo AM, Mitra PP. A literature mining and curation system for neuroscience knowledge discovery. 2008 Meeting of the Society for Neuroscience, Washington, D.C.

[ PDF ] : Bohland JW, Bokil H, Wu C, Breiter HC, Makris N, Kennedy DN, Allen CB, Mitra PP. Quantitative comparison of anatomical parcellation schemes for MRI. 2007 Meeting of the Society for Neuroscience, San Diego, CA.

[ PDF ] : Lin JM, Andrews PA, Burns GA, Bohland JW, Allen CB, Mitra PP. Community structure of neuroscience research: inferences from a co-authorship graph of Society for Neuroscience meeting abstracts. 2007 Meeting of the Society for Neuroscience, San Diego, CA.

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